PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g014140.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 395aa    MW: 42877.5 Da    PI: 6.9634
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g014140.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.53e-3561167388
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................ 65 
                         g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++                            
  Sopim12g014140.0.1  61 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELppwkptttgvdhalqddidvgtastiml 151
                         89*************************************************************8877777766666666654433333333 PP

                 TCP  66 .ssssaseceaesssssasnsssg 88 
                          +        ++s sss++n +++
  Sopim12g014140.0.1 152 gQ--------NNSASSSGENVNAN 167
                         21........22222222211111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3161188IPR005333Transcription factor, TCP
PROSITE profilePS5136932.85562120IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYEDLDTIKQ QQEQARSKKR SFFPPPPPRP SCSKQKGVTS SKFGCGEIVE VQGGHIIRSI  60
GRKDRHSKVC TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD RPSKAVDWLI KKAKASIDEL  120
AELPPWKPTT TGVDHALQDD IDVGTASTIM LGQNNSASSS GENVNANTKA DGSFMPHSLD  180
SDAISDTIKS FFPMGGSGSN EGNSFQSFQQ HNLMSRSQDL KLSLQSFQDP QAQFEASNFF  240
TGFDASVWPQ HQQQPVELGR LAAARGDIGG GAIAGAGSYL FNSQPAPPLL QQLFTQNQFL  300
SQRGPLQSSY SPSIRAWIDP SAIAIATADP IHQNQNHHQA VFPMYSTSLS GIGFASELGG  360
FSGFRIPTRI QGEIEEEHDG VSDKPSSASS DSRH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095840.0AC209584.1 Solanum lycopersicum DNA sequence from clone LE_HBa-21L2 on chromosome 12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234367.20.0TCP transcription factor 3
SwissprotQ8LPR51e-94TCP4_ARATH; Transcription factor TCP4
TrEMBLK4DCU90.0K4DCU9_SOLLC; Uncharacterized protein
STRINGSolyc12g014140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-81TCP family protein